Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1117287_1117409_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1117287 - 1117409

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTACAGCGG

5'SS Class:

weak_major

3'SS Sequence:

CCCTCCCCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TGCCCCTCACCG

Flanking Amino Acid:

LAAQHGHYDVSEMLLQHQSN

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.1

41.4

44.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

75.8

0.58

0.7

24.8

Minor 5ss

28.6

-2.5

3.5

35.4

43.2

Minor BPS

47.7

-0.3

1.9

53.98

46.4

Associated Gene:

Gene:

CASKIN1

Ensembl Gene ID:

ENSAPLG00000024608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024626

1114638 - 1130066

15429

ENSAPLT00000017998

1114638 - 1129507

14870

ENSAPLT00000043102

1114638 - 1130066

15429