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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1117506_1117759_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1117506 - 1117759
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTGCTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTTTGCTGATCC
Flanking Amino Acid:
DLACEFGRVGVVQLLLNSNM
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
74.4
0.55
1
66.1
44.4
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
49.5
-0
2.1
68.17
43

Associated Gene:

Gene:
CASKIN1
Ensembl Gene ID:
ENSAPLG00000024608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043102
1114638 - 1130066
15429
ENSAPLT00000024626
1114638 - 1130066
15429
ENSAPLT00000017998
1114638 - 1129507
14870