About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11186259_11186644_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11186259 - 11186644
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
GGGATCTCAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
45.6
-0.2
1.8
58.55
44

Associated Gene:

Gene:
CDIP1
Ensembl Gene ID:
ENSAPLG00000029972
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043215
11186165 - 11189793
3629