About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11186744_11187277_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11186744 - 11187277
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CCTCCTGTGACT
Flanking Amino Acid:
EEKHGPPPATDGVSPAVGQP
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
49
0
2.1
67.82
43.7

Associated Gene:

Gene:
CDIP1
Ensembl Gene ID:
ENSAPLG00000029972
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043215
11186165 - 11189793
3629