About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11192774_11193456_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11192774 - 11193456
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGCCTCTCACAT
Flanking Amino Acid:
KGRIKKELFKLATVALYFTY
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.8
0.47
0.9
65.5
36.1
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
41.9
-0.5
1.8
52.27
41.9

Associated Gene:

Gene:
HMOX2
Ensembl Gene ID:
ENSAPLG00000002475
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002492
11191013 - 11195415
4403