Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11200696_11200782_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11200696 - 11200782

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTCC

5'SS Class:

major

3'SS Sequence:

GAGCTTTCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

CCTGCTCCGACT

Flanking Amino Acid:

ICGDCGKSFRRSHLIQHQRV

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

62.8

38.8

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

62.8

0.29

1.1

58.1

42.8

Minor 5ss

39.2

-1.2

2.9

43.1

44.2

Minor BPS

43.8

-0.4

1.9

59.4

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039513

11199880 - 11203299

3420