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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11212136_11212760_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11212136 - 11212760
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTTCCTTGATT
Flanking Amino Acid:
DGSDISFGSQSSFAKEFEAC
Intron Amino Acid Position:
1769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
82.8
1.11
1
90.9
33.1

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379