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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11213592_11214979_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11213592 - 11214979
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCGTGGTAATT
Flanking Amino Acid:
AADANPVKTPEPACQESNQS
Intron Amino Acid Position:
1574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.3
0.5
0.9
65.4
35.8
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
41.4
-0.5
2.5
60.57
44.3

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379