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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11217439_11218286_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11217439 - 11218286
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACC
5'SS Class:
major
3'SS Sequence:
TATCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTACTATTATCT
Flanking Amino Acid:
MLPQVRALAARFGVRELIGE
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
72.7
36.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
83.6
0.76
0.8
77.6
30.7
Minor 5ss
39.4
-1.2
2.3
47.3
41.1
Minor BPS
53.2
0.18
1.9
75.48
40.7

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379