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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11218457_11220209_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11218457 - 11220209
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CCTCTTACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTCCTCTTACCC
Flanking Amino Acid:
YARCPQAVEVVHREGFLVEE
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
73.9
0.54
0.8
65.7
34.6
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
61.9
0.35
1.6
71.01
40.5

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379