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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11220357_11223467_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11220357 - 11223467
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTGTGTTATTT
Flanking Amino Acid:
KKFLTSSCKKSSLRLLAEDF
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.1
34.6
Major BPS
69.1
0.48
1
70
32.1
Major PPT
76.7
0.6
0.9
69.1
41.8
Minor 5ss
34.3
-1.8
3.1
41.3
39
Minor BPS
48.3
-0
2.3
74.56
43.3

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379