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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11225333_11227352_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11225333 - 11227352
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACAC
5'SS Class:
major
3'SS Sequence:
CCTTTTTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CCCTTTTTGATC
Flanking Amino Acid:
PAIAPWKPVQNHKPDNVPPS
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
62.1
38.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.2
0.59
1
77.1
35.8
Minor 5ss
25.4
-2.8
3.1
32.1
42.7
Minor BPS
54.2
0.11
1.2
55.41
38.4

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379