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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1122631_1122760_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1122631 - 1122760
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TCTCCTTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
GGGCCCTGATGC
Flanking Amino Acid:
EIWVLRKPFAGGDRSSLGST
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
75.8
0.58
0.9
72
32.5
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
42.2
-0.6
1.9
46.52
41.8

Associated Gene:

Gene:
CASKIN1
Ensembl Gene ID:
ENSAPLG00000024608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043102
1114638 - 1130066
15429
ENSAPLT00000024626
1114638 - 1130066
15429
ENSAPLT00000017998
1114638 - 1129507
14870