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Intron Name: Anas_platyrhynchos_platyrhynchos_15_1122880_1123903_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1122880 - 1123903

Intron Length:

1024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

GGGTGTTTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCCT

U12 Branch Point Sequence:

CCTGCCTGCTCT

Flanking Amino Acid:

ALHASSEGVKLLATVLSQKA

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

29.6

-1.2

4.1

37.5

Major PPT

73.6

0.53

69.2

46.1

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

35.4

-1

3.5

59.91

49.3

Associated Gene:

Gene:

CASKIN1

Ensembl Gene ID:

ENSAPLG00000024608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043102

1114638 - 1130066

15429

ENSAPLT00000024626

1114638 - 1130066

15429

ENSAPLT00000017998

1114638 - 1129507

14870