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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11232074_11232886_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11232074 - 11232886
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAA
U12 Branch Point Sequence:
TCTTAGTTAACT
Flanking Amino Acid:
ESQEQNSPENDIHDLPSVQH
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.1
35.8
Major BPS
64.3
0.36
1.2
55.7
41.6
Major PPT
77.7
0.62
0.9
72.1
37.9
Minor 5ss
43.8
-0.7
3
58
42
Minor BPS
62.6
0.47
2.2
84.76
41.8

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379