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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11233151_11234161_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11233151 - 11234161
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGACTGGTAAAG
Flanking Amino Acid:
ASDCSQRILTVNALNGSSQT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
81.6
0.71
0.7
73.9
31.2
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
37.4
-1
2.4
43.29
41.7

Associated Gene:

Gene:
SLX4
Ensembl Gene ID:
ENSAPLG00000029433
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018192
11211360 - 11236738
25379