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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11250520_11250804_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11250520 - 11250804
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTTATTTAATG
Flanking Amino Acid:
PDLAQMLLDQIYENAMIAAG
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.2
0.86
0.6
87.7
22.4
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
59.7
0.17
1.6
60.65
41.8

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489