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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11251934_11252408_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11251934 - 11252408
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTGA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGTCCACTGATC
Flanking Amino Acid:
KEENFEESRPAAERLTEREA
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.2
59.3
42.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78
0.63
0.9
73.8
36.9
Minor 5ss
47.7
-0.2
2.9
64.8
46.5
Minor BPS
47.2
-0.2
1.9
62.45
36.4

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489