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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11253174_11253704_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11253174 - 11253704
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
ACGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTGCCTCCAGCT
Flanking Amino Acid:
IVTIAEQDVKEDIAKLLRYE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
80.4
0.68
0.9
77.4
36.3
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
41.8
-0.5
2
58.28
44.6

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489