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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11255079_11255203_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11255079 - 11255203
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TGTGTATGCATC
Flanking Amino Acid:
ILPKWLRFLRGVVDSEDIPL
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
77.2
0.61
0.9
68.2
42.3
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
40.6
-0.7
2
52.41
39.2

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489