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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11255769_11258296_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11255769 - 11258296
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
GGGGACTCATCT
Flanking Amino Acid:
LNGRRINTLQALWMLDPKDI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
74.9
0.56
0.8
69.2
31.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
42.2
-0.5
2
54.92
46.1

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489