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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11258669_11259786_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11258669 - 11259786
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
TTTCTAATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTCTAATCC
Flanking Amino Acid:
GSPGYHWSSDGSGMFEIAEA
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.7
0.56
0.8
67.4
38
Minor 5ss
30.5
-2.2
3.6
38.1
46.8
Minor BPS
55.5
0.15
1.9
70.41
41.2

Associated Gene:

Gene:
TRAP1
Ensembl Gene ID:
ENSAPLG00000016060
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016788
11249632 - 11268120
18489