Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11260740_11267853_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11260740 - 11267853

Intron Length:

7114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTCCC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAG

U12 Branch Point Sequence:

GGTATTTCAGCT

Flanking Amino Acid:

DGGKGTITIQDTGIGMTQEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

60.8

44.2

Major BPS

67.2

0.43

1.5

77.4

37.3

Major PPT

100

1.12

0.4

100

Minor 5ss

-1.1

54.6

42.5

Minor BPS

46.3

-0.2

1.7

62.34

41.5

Associated Gene:

Gene:

TRAP1

Ensembl Gene ID:

ENSAPLG00000016060

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016788

11249632 - 11268120

18489