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Intron Name: Anas_platyrhynchos_platyrhynchos_15_1126220_1126308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1126220 - 1126308

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCCG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTACCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAC

U12 Branch Point Sequence:

CCCTTTCTACCT

Flanking Amino Acid:

ITTISRMTPEDLTAIGVTKP

Intron Amino Acid Position:

606

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

63.1

Major BPS

63.9

0.35

1.3

64.5

42.5

Major PPT

79.9

0.67

0.8

29.2

Minor 5ss

25.6

-2.8

30.2

Minor BPS

45.2

-0.2

1.9

58.74

45.3

Associated Gene:

Gene:

CASKIN1

Ensembl Gene ID:

ENSAPLG00000024608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043102

1114638 - 1130066

15429

ENSAPLT00000024626

1114638 - 1130066

15429

ENSAPLT00000017998

1114638 - 1129507

14870