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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1126411_1126660_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1126411 - 1126660
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CCGCACCCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGTGCAA
U12 Branch Point Sequence:
TGTCCCGCACCC
Flanking Amino Acid:
IPEWLPEYKPANLALWLSMI
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
43.2
-0.4
1.5
49.1
46.3
Major PPT
56.9
0.16
0.8
46.8
30.7
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
43.9
-0.4
2.4
61.01
43.9

Associated Gene:

Gene:
CASKIN1
Ensembl Gene ID:
ENSAPLG00000024608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017998
1114638 - 1129507
14870
ENSAPLT00000043102
1114638 - 1130066
15429
ENSAPLT00000024626
1114638 - 1130066
15429