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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1126800_1126874_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1126800 - 1126874
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
GTGCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCGGCACTGACA
Flanking Amino Acid:
DLQEIGITKLGHQKKLMLAV
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
64.7
0.33
1
54.4
41.4
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
42.8
-0.5
2
48.87
41.7

Associated Gene:

Gene:
CASKIN1
Ensembl Gene ID:
ENSAPLG00000024608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043102
1114638 - 1130066
15429
ENSAPLT00000024626
1114638 - 1130066
15429
ENSAPLT00000017998
1114638 - 1129507
14870