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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11269179_11269892_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11269179 - 11269892
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCACGGACA
5'SS Class:
major
3'SS Sequence:
TGTATTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TCTCCCTGTATT
Flanking Amino Acid:
IISNTENVKGGVL*
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.7
38.4
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
72.9
0.52
0.9
70.3
41.2
Minor 5ss
20.7
-3.4
3.8
22.9
37.1
Minor BPS
54.7
0.23
1.8
74.36
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039860
11269169 - 11271788
2620