Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11270061_11271696_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11270061 - 11271696

Intron Length:

1636

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCGGTTTGT

5'SS Class:

weak_major

3'SS Sequence:

ATCTTCTAGCAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

TTTTACTGAAAC

Flanking Amino Acid:

EASSVAAVRGGGPACLPREI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.2

0.15

1.3

43.8

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

56.8

0.15

1.2

57.2

42.2

Minor 5ss

24.4

-2.9

3.9

31.5

42.7

Minor BPS

63.8

0.41

1.7

78.27

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039860

11269169 - 11271788

2620