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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11277174_11278493_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11277174 - 11278493
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GACAACTGAACC
Flanking Amino Acid:
ETRWHCTVCEDYDLCINCYN
Intron Amino Acid Position:
1520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.6
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
87.1
0.83
0.8
84.6
30.3
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
48.6
-0.1
1.7
55.7
41.5

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037