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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11279194_11282050_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11279194 - 11282050
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GCACTTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
TAAAGTTTAACA
Flanking Amino Acid:
ESTAASETTEGSQGDSKNAK
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.1
30.7
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
72.6
0.51
1
65.8
39.4
Minor 5ss
34.1
-1.8
2.8
39.6
46.4
Minor BPS
56.6
0.2
1.8
66.19
40

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016329
11275002 - 11352038
77037
ENSAPLT00000027902
11275002 - 11363873
88872