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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11282219_11283459_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11282219 - 11283459
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCTAC
5'SS Class:
major
3'SS Sequence:
TGTCACTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTTATT
Flanking Amino Acid:
FAERIIHDYKDIFKQATEDR
Intron Amino Acid Position:
1316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
63.1
38
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
68.7
0.42
1
62.7
38.2
Minor 5ss
46.6
-0.3
2.5
59.1
45.8
Minor BPS
61.4
0.44
1.9
81.12
40.6

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037