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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11284015_11284452_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11284015 - 11284452
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
CTCATTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCATT
Flanking Amino Acid:
YGSDCPPPNTRRVYISYLDS
Intron Amino Acid Position:
1222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
0.9
69.1
35.7
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
62.8
0.48
1.7
81.14
35.2

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016329
11275002 - 11352038
77037
ENSAPLT00000027902
11275002 - 11363873
88872