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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11284600_11285379_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11284600 - 11285379
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CTTCCTGTCACT
Flanking Amino Acid:
TVEVKPGMKSRFVDSGEMSE
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
87.4
0.84
0.7
80.3
31.8
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
47.5
-0.1
2.4
72.56
44.8

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037