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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11285531_11289130_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11285531 - 11289130
Intron Length:
3600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCCCTTCAATT
Flanking Amino Acid:
TRKENKFSAKRLQTTRLGNH
Intron Amino Acid Position:
1123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.2
0.59
0.9
66.5
38.4
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
49.8
0.06
1.6
60.73
43.9

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037