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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11289774_11291638_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11289774 - 11291638
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
AATAACAAAACT
Flanking Amino Acid:
KKKNDTLDPEPFVDCKECGR
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
45.7
-0.2
2.1
66.96
42.7

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037