About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11291696_11292382_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11291696 - 11292382
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
TCTTTGTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATGTTAACT
Flanking Amino Acid:
TLGDDPSQPQTTISKDQFEK
Intron Amino Acid Position:
1055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
63.6
48.1
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
35
-1.7
2.9
40.6
38.7
Minor BPS
59.4
0.37
2.1
79.88
42.3

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037