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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11298668_11298802_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11298668 - 11298802
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ACATCTTAAAAA
Flanking Amino Acid:
PVDPQLLGIPDYFDIVKNPM
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
68
0.4
1.2
67.5
42.8
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
50.8
0.02
1.7
59.51
40.4

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037