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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11305408_11306925_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11305408 - 11306925
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TGTCTCTTAAGA
Flanking Amino Acid:
QSTAQAGVAQQGQVPSAALP
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
69.9
0.49
1
61.3
37
Major PPT
78.2
0.63
0.7
70.3
30.7
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
64.8
0.46
1.6
73.25
38.4

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037