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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11307115_11307673_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11307115 - 11307673
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTTCGTACT
5'SS Class:
major
3'SS Sequence:
TGTTAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATAGCTTTAATT
Flanking Amino Acid:
QMNNMGAVPAMAMSPSRMPQ
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.2
68
42.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.6
0.71
0.9
78
40.1
Minor 5ss
34.1
-1.8
2.8
46
41.7
Minor BPS
69.8
0.7
1.3
78.82
37.8

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037