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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11307799_11308669_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11307799 - 11308669
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTATG
5'SS Class:
major
3'SS Sequence:
GGTGCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTGTTCCTAATG
Flanking Amino Acid:
VPISRMQVSQGMNQFNPMSI
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
74.4
41.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
70.6
0.46
1
62.2
43.4
Minor 5ss
53.5
0.12
2.1
68.3
42.6
Minor BPS
60.8
0.2
1.7
67.37
40.8

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037