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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11312461_11312922_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11312461 - 11312922
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
GTACTCTTAACA
Flanking Amino Acid:
TALPTSLGTNNPLMNDGTNT
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
59.6
39.4
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
32.8
-2
3.3
42.2
38.9
Minor BPS
72.3
0.7
1.2
74.59
36.1

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037