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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11321174_11321713_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11321174 - 11321713
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TAAGAATTGACC
Flanking Amino Acid:
THCQAGKACQVAHCASSRQI
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
84.5
0.78
0.8
79.8
32.1
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.9
-0.2
1.9
57.84
40.5

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037