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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11331102_11351325_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11331102 - 11351325
Intron Length:
20224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCATT
Flanking Amino Acid:
NTAQTGAMTKMGMTGNTSPF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
61.1
0.43
2
83.58
37.4

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872
ENSAPLT00000016329
11275002 - 11352038
77037