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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1133252_1133495_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1133252 - 1133495
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
TGTCTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAGAA
U12 Branch Point Sequence:
TGTCTCTCCACA
Flanking Amino Acid:
FSGAVDSTVKVWTC*
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
52.6
0.07
1
50.3
35.4
Major PPT
78.5
0.64
0.8
72.6
32.3
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
49
-0
2
65.67
40.5

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693