Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1133616_1133835_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1133616 - 1133835

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTACGTGTC

5'SS Class:

major

3'SS Sequence:

TGTGTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

TGTGCCCCACGC

Flanking Amino Acid:

FSASYDRSLRVWSMDNMICT

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

70.9

40.8

Major BPS

52.1

0.05

1.3

41.8

Major PPT

69.2

0.43

61.5

40.2

Minor 5ss

35.7

-1.6

3.5

43.5

44.3

Minor BPS

38.9

-0.8

2.2

51.97

45.1

Associated Gene:

Gene:

TRAF7

Ensembl Gene ID:

ENSAPLG00000007038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007359

1133237 - 1147929

14693