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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1133968_1134154_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1133968 - 1134154
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTCCAT
U12 Branch Point Sequence:
TGGTCCATGAGC
Flanking Amino Acid:
VCGTYENLIHVWDIETKEQV
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
70.5
38.9
Major BPS
47.8
-0.1
1.5
58.2
48.3
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
33.2
-1.9
3.6
47.1
42
Minor BPS
49.8
-0
2
63.52
42.2

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693