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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1134275_1134915_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1134275 - 1134915
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTTGCTCATCA
Flanking Amino Acid:
LYSGSYQTIKIWDIRNLECV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.9
0.61
0.9
73.2
37.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
48.6
-0.1
2.2
67.27
45.2

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693