Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1135039_1136095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1135039 - 1136095

Intron Length:

1057

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGCTC

5'SS Class:

major

3'SS Sequence:

GTGCTCTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

GGCCCTGTGACT

Flanking Amino Acid:

LFSGSLKAIKVWDIVGTELK

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.48

1.1

61.2

40.4

Major BPS

58.6

0.22

1.5

38.9

Major PPT

71.6

0.49

0.9

64.9

36.5

Minor 5ss

33.3

-1.9

3.7

49.6

Minor BPS

46.7

-0.1

61.85

42.2

Associated Gene:

Gene:

TRAF7

Ensembl Gene ID:

ENSAPLG00000007038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007359

1133237 - 1147929

14693