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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11351377_11351502_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11351377 - 11351502
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
AGTATCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
GAGACTTTAACC
Flanking Amino Acid:
MNQPQQGQGQMAGHTGLNTA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
69.5
0.44
0.9
61.9
39.3
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
65.1
0.45
1.3
65.2
40.1

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016329
11275002 - 11352038
77037
ENSAPLT00000027902
11275002 - 11363873
88872