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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11352039_11363590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11352039 - 11363590
Intron Length:
11552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTAACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTGCTTTAACT
Flanking Amino Acid:
MLESADFGSLFDLEN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.9
0.69
0.9
74.1
35.2
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
77.8
0.95
1.3
87.23
39

Associated Gene:

Gene:
CREBBP
Ensembl Gene ID:
ENSAPLG00000015596
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027902
11275002 - 11363873
88872